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View Code? Open in Web Editor NEWAutomatically exported from code.google.com/p/ltr-finder
Automatically exported from code.google.com/p/ltr-finder
useful usage: link ltr_finder and genome_plot.pl ./ltr_finder TestSet/yeast.fa -PCHR10 -w2 -f /dev/stderr 2>&1 >fig_test/result.txt | perl genome_plot.pl fig_test/ algorithm get pair join pair(also cut at possible gap) extend pair find edge find TG..CA and TSR find signal(find PBS and PPT) find RT find IN(core) IN(c-term) RH(if -a) output with restrict can read multi sequence now predict domains modify SuffixArray function, no longer change input string stdaln can handle NNNN vs atcg delete exact match pairs that contain Ns fix bug: handle 'NNNNNNN' before local_align
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