andreas-wilm Goto Github PK

genomics-on-azure

Unofficial genomics resources for Azure

goleft

goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary

got-your-back

Got Your Back (GYB) is a command line tool for backing up your Gmail messages to your local computer. It uses the standard IMAP protocol but also takes advantage of some custom Gmail IMAP extensions. For help with GYB, see the Getting Started Guide at https://github.com/jay0lee/got-your-back/wiki

grab-challenge-test

graphmap

GraphMap - A highly sensitive and accurate mapper for long, error-prone reads

hts-nim

nim wrapper for htslib for parsing genomics data files

icgc-tcga-dream-mutation-calling-challenge-tools

Tools for participants in the ICGC-TCGA DREAM Mutation Calling challenge

kubernetes-ci-cd

https://www.linux.com/blog/learn/chapter/Intro-to-Kubernetes/2017/5/set-cicd-pipeline-kubernetes-part-1-overview

lacer

Lacer: Accurate Base Quality Score Recalibration using Linear Algebra

lofreq3

LoFreq Version 3

lorenzgerber.github.io

methylseq

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel

microsoft-roadshow-hongkong-09-2019

Material for the Microsoft Hong Kong Roadshow in September 2019

msft-grab-frs

my-dot-emacs

My .emacs file

my-dot-vimrc

my-neovim-init

my-terrarium

A simple drag and drop meditation

networkx

Network Analysis in Python

nextflow

A DSL for data-driven computational pipelines

nf-core-bacass

Simple bacterial assembly and annotation pipeline

nim-gmlparser

Experimental code for parsing GML files with Nim

nimbioseq

Nim Library for sequence (protein/nucleotide) bioinformatics

nimreadfq

A wrapper to Heng Li's kseq/readfq, an efficient FastQ/Fasta parser

opera-ms

OPERA-MS - Hybrid Metagenomic Assembler

packages

List of packages for Nimble

pipelines-python-django

Sample Python Django application for Azure Pipelines docs

pysam

Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.

quad

Base quality mapping in BAM files

research-on-azure

Resources for research on Azure