aleighbrown / pwgs_snakemake Goto Github PK

Hi Anna,

Any particular reason you used Facets, not Titan/Battenberg for phylowgs?

Thanks
Chingiz

I get this error when running the parser with facets.tsv file. In my tsv file i have these columns:

Traceback (most recent call last):
File "/Users/adhisadi/workspace/analysis/parse_cnvs_facets_extension.py", line 232, in
main()
File "/Users/adhisadi/workspace/analysis/parse_cnvs_facets_extension.py", line 228, in main
regions = parser.parse()
^^^^^^^^^^^^^^
File "/Users/adhisadi/workspace/analysis/parse_cnvs_facets_extension.py", line 100, in parse
if (str.isdigit(record['tcn.em']) and str.isdigit(record['lcn.em'])):
~~~~~~^^^^^^^^^^
KeyError: 'tcn.em'