aleighbrown / pwgs_snakemake Goto Github PK
View Code? Open in Web Editor NEWSnakemake pipeline for running PhyloWGS on NIH Biowulf Cluster
Snakemake pipeline for running PhyloWGS on NIH Biowulf Cluster
Hi Anna,
Any particular reason you used Facets, not Titan/Battenberg for phylowgs?
Thanks
Chingiz
I get this error when running the parser with facets.tsv file. In my tsv file i have these columns:
Traceback (most recent call last):
File "/Users/adhisadi/workspace/analysis/parse_cnvs_facets_extension.py", line 232, in
main()
File "/Users/adhisadi/workspace/analysis/parse_cnvs_facets_extension.py", line 228, in main
regions = parser.parse()
^^^^^^^^^^^^^^
File "/Users/adhisadi/workspace/analysis/parse_cnvs_facets_extension.py", line 100, in parse
if (str.isdigit(record['tcn.em']) and str.isdigit(record['lcn.em'])):
~~~~~~^^^^^^^^^^
KeyError: 'tcn.em'
A declarative, efficient, and flexible JavaScript library for building user interfaces.
๐ Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. ๐๐๐
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google โค๏ธ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.