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Srinivasa Rao Rao's Projects

2022-03-14-ling icon 2022-03-14-ling

A website for the Python flavoured Software Carpentry workshop organised by RROx (March 2022)

ascat icon ascat

ASCAT copy number R package

dna-seq-varlociraptor icon dna-seq-varlociraptor

Variant detection with Delly and Freebayes, followed by statistical assessment with Varlociraptor

dpclust icon dpclust

Dirichlet Process based methods for subclonal reconstruction of tumours

eecseq icon eecseq

Protocol for Expressed Exome Capture Sequencing

lancet icon lancet

Microassembly based somatic variant caller for NGS data

maftools icon maftools

Summarize, Analyze and Visualize MAF files from TCGA or in house studies.

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