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aws-transcription-parser

An automatic parser of Amazon Transcribe jobs which outputs to HTML and DOCX.

bioinformatics-tool-template

bioinformatics-tools

This repository holds code that has been developed by me as a member of the Notre Dame Bioinformatics Laboratory under the direction of Dr. Scott Emrich.

cloud-app-tutorial

Application tutorials for St. Jude Cloud.

connect-the-dots-in-a-github-repository

docs

Technical documentation for the St. Jude Cloud.

github-actions-continuous-delivery

github-actions-for-ci

github-actions-for-packages

hello-github-actions

innersource

merge-counts

Utility for merging RNA-seq expression counts files from St. Jude Cloud.

meteor-autoform

AutoForm is a Meteor package that adds UI components and helpers to easily create basic forms with automatic insert and update events, and automatic reactive validation.

miniwdl-lsf

LSF backend for miniwdl

mongol-meteor-devtools

In-App MongoDB Editor for Meteor (Meteor DevTools)

portfolio

A simple SPA Portfolio template for developer/designers built with React. Use it to showcase your work, testimonials and other information to clients.

programmable-xmas-tree

Sample code for ModMyPi's Programmable Xmas Tree

rnaindel

Somatic indel discovery tool for tumor RNA-Seq data.

samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

samtools_filter_exact

DNAnexus applet to filter inexact and exact matches into two separate BAMs for further analysis

samtools_flagstat

DNAnexus applet to create a flagstat for a BAM using samtools

seaseq

Abraham's lab - ChipSeq Pipeline

security-strategy-essentials

stjudecab.github.io

Official website for St. Jude CAB

template-test

test_template

the-documentation-compendium

📢 Various README templates & tips on writing high-quality documentation that people want to read.

wdl

Rust crates for working with Workflow Description Language (WDL) documents.

wdl_hello_world

Test repository for WDL

workflows

Bioinformatics workflows developed for and used on the St. Jude Cloud project.