This repository holds code that has been developed by me as a member of the Notre Dame Bioinformatics Laboratory under the direction of Dr. Scott Emrich.
Components:
maker/: contains updated scripts for MAKER (http://www.yandell-lab.org/software/maker.html) which run using the Work Queue framework from the Cooperative Computing Lab at the University of Notre Dame (http://www.cse.nd.edu/~ccl/). These scripts allow the user to utilize a variety of distributed computing platforms.
blast/: contains scripts for running a distributed blast using the Makeflow framework from the Cooperative Computing Lab at the University of Notre Dame. Also include is an xml tool specification for using it inside of the Galaxy framework.