Interpretable Structure-based Graph Neural Networks Based on Designed Inter-graph Attention Mechanisms for Predicting Protein-Ligand Interactions
- Create a new conda environment using:
$ conda create -n dsbin
- Installing RDKit:
$ conda install -c rdkit rdkit
- Installing other dependencies:
$ conda install -c pytorch pytorch
$ pip install dgl
(Please check here for installing for different cuda builds)
$ pip install numpy
$ pip install pandas
$ pip install tqdm
$ pip install sklearn
$ pip install networkx
To run the code following isntructions can be followed.
python main.py --name dsbin