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dsbin's Introduction

Interpretable Structure-based Graph Neural Networks Based on Designed Inter-graph Attention Mechanisms for Predicting Protein-Ligand Interactions

image

Installation:

  • Create a new conda environment using:
    $ conda create -n dsbin
  • Installing RDKit:
    $ conda install -c rdkit rdkit
  • Installing other dependencies:
    $ conda install -c pytorch pytorch
    $ pip install dgl (Please check here for installing for different cuda builds)
    $ pip install numpy
    $ pip install pandas
    $ pip install tqdm
    $ pip install sklearn
    $ pip install networkx

Running the Code:

To run the code following isntructions can be followed.

python main.py --name dsbin 

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