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rdkit2ase's Introduction

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rdkit2ase - Interface between the rdkit and ASE package.

Installation via pip install rdkit2ase.

from rdkit2ase import rdkit2ase, ase2rdkit

atoms: ase.Atoms = rdkit2ase(mol)
mol = ase2rdkit(atoms)
from rdkit2ase import smiles2atoms

atoms: ase.Atoms = smiles2atoms("O")

print(atoms)
>>> Atoms(symbols='OH2', pbc=False)

Limitations

  • rdkit2ase.ase2rdkit won't be able to detect higher order bonds.

rdkit2ase's People

Contributors

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Stargazers

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rdkit2ase's Issues

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