zhengp0 / limetr Goto Github PK

Dear Professor Zheng,
I have tried to run your example code in docker.
However, the code failed to run in the native environment
Comparing two packages, I have found that limetr package version was inconsistent (docker 0.0.2, verfication releases: 0.0.5)
I wonder if these two versions have any differences，which may cause the code fit_model() not to run

Dear Professor Zheng,

I came across your lately published paper "[Zheng P, Barber R, Sorensen R J D, et al. Trimmed Constrained Mixed Effects Models: Formulations and Algorithms[Z]. 2020.](url: https://arxiv.org/abs/1909.10700)", it is astounding and inspiring. However, I have one question for your paper. In Table 1, you suggest that INLA package cannot deal with "Covariates in random effects variance", and has no "Linear constraints". Yet, it seems to me that the f() function within inla() function can exactly deal with covariates in random effects. Besides, the "extraconstr" argument in inla() can also introduce linear constraints to the fitting model. Thus, I have some doubts for your results.

Also, the link of codes provided by your paper is no longer accessible, could you please share with us your experimental codes for your paper?

Much appreciated,
Dr Xiao Lin

Thanks for making this available! I have found that the import order matters in a surprising way:

If I use

import seaborn
import limetr  # needs to be imported before seaborn to work. weird, huh?

I receive the following error

---------------------------------------------------------------------------
ImportError                               Traceback (most recent call last)
<ipython-input-1-9f4b0b4257cd> in <module>
      1 import seaborn
----> 2 import limetr  # needs to be imported before seaborn to work. weird, huh?

/homes/abie/.conda/envs/limetr_conda/lib/python3.7/site-packages/limetr/__init__.py in <module>
      1 # nonlinear mixed effects model
      2 import numpy as np
----> 3 import ipopt
      4 from copy import deepcopy
      5 from limetr import utils

/homes/abie/.conda/envs/limetr_conda/lib/python3.7/site-packages/ipopt/__init__.py in <module>
     42 from __future__ import absolute_import
     43 
---> 44 from cyipopt import *
     45 from .ipopt_wrapper import minimize_ipopt
     46 from .version import __version__

ImportError: dlopen: cannot load any more object with static TLS

If I reverse the order of these imports, it works. This only happens in my Jupyter notebook. In a python interpreter on the command line, I can use either order.