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zeromtmu's Projects

metamap icon metamap

MetaMap - This repository describes the code and analyses accompanying the "MetaMap: An atlas of metatranscriptomic reads in human disease-related RNA-seq data" manuscript.

ml_cheat_sheet icon ml_cheat_sheet

My notes and superstitions about common machine learning algorithms

mlcp icon mlcp

Machine learning pipeline for CellProfiler 3.0 output

mmoi-calc icon mmoi-calc

Experimental molecule moments of inertia calculator.

modifiednb icon modifiednb

Popular cheminformatics Naïve Bayes model implemented in scikit-learn

moses icon moses

Molecular Sets (MOSES): A Benchmarking Platform for Molecular Generation Models

multiple_regression_gene_expression_predictions icon multiple_regression_gene_expression_predictions

The goal of this coding project is to generate a simple regression model (that takes a single input to make a prediction) and compare its performance to a multiple regression model (that takes more than one input to make a prediction.) The models are built in the context of the input, gene expression of a gene familiy, and how it affects the output, effector gene expression. I expect that a regression model built with multiple gene expression inputs would more precisely predict the gene expression of an effector gene. The goal is test this code with existing gene expression repositories such as the NIH Gene Expression Omnibus (GEO) repository.

mychembl icon mychembl

Resources used to create the myChEMBL virtual machine

neural-networks icon neural-networks

A series of documented Jupyter notebooks implementing various neural nets.

notebooks icon notebooks

A collection of IPython Notebooks on chemoinformatics

obchord icon obchord

PostgreSQL extension for Chemical Objects in a Relational Database (CHORD) using openbabel

oemicroservices icon oemicroservices

A collection of RESTful microservices built around OpenEye toolkits

openchem icon openchem

OpenChem: Deep Learning toolkit for Computational Chemistry and Drug Design Research

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