zanglab Goto Github PK
Name: Zang Lab @ UVA
Type: User
Name: Zang Lab @ UVA
Type: User
bart2 package
A computational method for inferring transcriptional regulators associated with genome-wide differential chromatin interactions.
BART (Binding Analysis for Regulation of Transcription) is a bioinformatics tool for predicting functional transcription factors (TFs) that bind at genomic cis-regulatory regions to regulate gene expression in the human or mouse genomes, given a query gene set or a ChIP-seq dataset as input. http://faculty.virginia.edu/zanglab/bart
BART (Binding Analysis for Regulation of Transcription) is a bioinformatics tool for predicting functional transcription factors (TFs) that bind at genomic cis-regulatory regions to regulate gene expression in the human or mouse genomes, given a query gene set or a ChIP-seq dataset as input. http://faculty.virginia.edu/zanglab/bart
Revised version using adaptive lasso model to predict functional transcription factors from a gene list or a ChIP-seq binding profile.
All codes used to generate the results and figures in BARTweb manuscript
Docker based, new version of BARTweb
All codes used to generate results and figure that are reported in CTCF project.
an algorithm for identifying multi-scale broad peaks from ChIP-seq data
code for the bioinformatics analyses of "Single-cell chromatin profiling of the primitive gut tube reveals regulatory dynamics underlying lineage fate decisions"
Code for UTX project
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