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oboparse's Introduction

OBOparse

Introduction

OBO file parser implemented with pyparsing.

Example

from oboparse import obo_parser, parse_result_to_networkx
from urllib.request import urlopen
from io import TextIOWrapper

with urlopen('http://purl.obolibrary.org/obo/go.obo') as f:
    parse_result = obo_parser.parseFile(TextIOWrapper(f), parseAll=True)
    parse_result.pprint()
    
graph = parse_result_to_networkx(parse_result)

Reference

  1. https://owlcollab.github.io/oboformat/doc/obo-syntax.html
  2. https://owlcollab.github.io/oboformat/doc/GO.format.obo-1_4.html

License

MIT

oboparse's People

Contributors

zachary822 avatar

Watchers

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