{yyxMosaicHunter} is an R package implemented MosaicHunter model using numerical algorithm, which could run for low-throughput ultra-high-depth sites in targeted sequencing, such as PASM.
I also implemented plug-in C codes using {Rcpp} to speed up the dynamic programming algorithm dealing with baseQs.
In the file yyxMosaicHunter_0.1.4.package.zip, yyxMosaicHunter_0.1.4.tar.gz contains the source code, while yyxMosaicHunter_0.1.4.zip in two release_* folders are the release for Windows platform.
Version 0.1.4 (2014-11-12) Author: Adam Yongxin Ye @ CBI