yuriyzubov / tif-to-zarr Goto Github PK

This script could be used for conversion of a .tiff file to .zarr format with OME-NGFF multiscales metadata structure.

1. open command line terminal
2. install tif_to_zarr pip install tif_to_zarr
3. run script using cli: tif_to_zarr --src=PATH_TO_SOURCE_DIRECTORY/input_file.tif --dest=PATH_TO_DEST_DIRECTORY/output_file.zarr
4. to convert a tiff file to zarr with custom metadata values, you can run smthg similar to this: tif_to_zarr --src=path_to_source_tif --dest=path_to_output_zarr -a x z y -t 1.0 2.0 3.0 -s 4.0 5.0 6.0 -u nanometer nanometer nanometer
5. To get the list of options, you may run this: tif_to_zarr --help