You can run code with your own PC/Notebook/... or on Google Colab.
conda create -n [NAME] python==3.9
conda activate [NAME]
git clone https://github.com/ytl0623/monai_wholeBody_ct_segmentation.git
cd monai_wholeBody_ct_segmentation
pip install -r requirements.txt
It will cost about three minutes. Check NIFTI directory after run done.
python -m monai.bundle run --config_file configs/inference.json
gzip -d NIFTI/DLCSI033/DLCSI033_trans.nii.gz
It will cost about three minutes. Check MONAI directory after run done.
python nii2png.py
It will cost about two minutes. Check DICOM directory after run done.
python main.py
There are two DICOM-RT files. (Original and MONAI)
Download Dicompyler
Pay attention to the Chinese path.