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MultiReport for RNA-Seq


MultiReport for RNA-Seq Pipeline

Usage

To use this code, you need to install MultiQC and then your code. For example:

# 环境配置
conda create -n multiqc multiqc
conda activate multiqc
git clone https://github.com/clinico-omics/chinese-quartet-rnaseq-report.git
cd rnaseq-report
pip install -r requirements.txt
pip install -e .

# 使用Multiqc命令
multiqc -h

Use python setup.py develop if you're actively working on the code - then you don't need to rerun the installation every time you make an edit (though you still do if you change anything in setup.py).

注意事项

  • post_alignment_qc/rnaseq_qc/和 post_alignment_qc/bam_qc/,这两个目录下所有文件名需要 samples_id.percent 形式,并且同一个样本两个目录下的 ID 要完全一致

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