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analysis

Analyses conducted on HemeMap.

bert

TensorFlow code and pre-trained models for BERT

bert_crf

BERT CRF model for Name Entity Recognition in pytorch

bilstm-crf-ner-pytorch

This repo contains a PyTorch implementation of a BiLSTM-CRF model for named entity recognition task.

biobert

BioBERT: a pre-trained biomedical language representation model

brat

brat rapid annotation tool (brat) - for all your textual annotation needs

brat-docker-cassj

containerised brat (http://brat.nlplab.org/)

chembl-downloader

Write reproducible code for getting and processing ChEMBL

clinicalbert

ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission

clinicalbert-1

repository for Publicly Available Clinical BERT Embeddings

conib

Curation of Neurodegeneration in BEL (CONIB)

conso

The Curation of Neurodegeneration Supporting Ontology (CONSO)

covid-pathways.github.io

coxpath

Scripts and data from "Towards a global investigation of transcriptomic signatures through co-expression networks and pathway knowledge for the identification of disease mechanisms"

curation

Guidelines and procedures for curation (manual and semi-automated)

data-maturity-yg

FAIR Dataset Maturity model

data-mining-2019-20

Ex Solutions for Data mining class

drugbank

User-friendly extensions of the DrugBank database

ebm-nlp

ebm-nlp-1

Implementation of Baseline model for PICO 2018 dataset https://github.com/bepnye/EBM-NLP/

efo

Github repo for the Experimental Factor Ontology (EFO)

fair-dsm-assessment-tool

farm

:house_with_garden: Fast & easy transfer learning for NLP. Harvesting language models for the industry.

hemekg

Modeling heme pathogenicity and pathway dysregulation in the context of hemolytic disorders

image-classification

A java project for classification of biomedical images

kgem-in-drug-discovery

Code to accompany the "Understanding the Performance of Knowledge Graph Embeddings in Drug Discovery" manuscript

lifescience-informatics-assignment

Contains codes for assignment given in LSI tutuorial

mechanish-enrichment-neurommsig

Lab course for Mechanism enrichment of NeuroMMSig

ner-bert-crf

nicta-piboso-dataset

This is the original dataset for ALTA-NICTA Challenge