Generate data for ggcoverage() examples about biocompr HOT 3 CLOSED

Hi Yoann,
that's a good idea.
I will generate the code within the next days and send it to you.
Best,

from biocompr.

Hi Yoann,
here is an example data set for the ggcoverage function:
/icgc/dkfzlsdf/analysis/G200/nbeumer/BiocompR/ggcoverage_example_data.rds
This data set represents cell numbers in 10 scRNA-seq samples, together with the numbers of cells that are filtered out.
The data are not exactly the data I'm working with (because these are confidential). However, the properties of the example data set are similar to those of some data that I would use ggcoverage for.
I hope this helps to show users the basic applications of ggcoverage.
Best wishes

from biocompr.

Hi NBeumer,
I added an example to the ggcoverage() function : it is not using the data that you have generated, however I believe your data will fit a lot more for a tutorial vignette.

Here is the deal:
Give a try to the latest version of ggcoverage on your real data for your own project. You can now use examples as a help to customize the plots you want to generate for your project.
Once you are happy with what you have done using ggcoverage(), you can E-mail me the part of your script related to ggcoverage: it will be used as a basis for writing the tutorial, using the fabricated data in "ggcoverage_example_data.rds".

If you are okay with that plan, I will close the issue.

from biocompr.