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lose_weight_for_sports

machine-learning-curriculum

:computer: Learn to make machines learn so that you don't have to struggle to program them; The ultimate list

mepigram

Methylated DNA motif discovery tool (modified)

micro-capture-c

MicroC analysis

misc_notebooks

module_detection

Discover modules --- simple and fast

monet

Monet: An open-source Python package for analyzing and integrating scRNA-Seq data using PCA-based latent spaces

mosaicatcher-pipeline

Integrated workflow for SV calling from single-cell Strand-seq data

motif_analysis

nfix_integrative_analysis

NFIX ChIP-seq, hematopoiesis

ovarian_cancer_project

pacbio_data_analysis

pnpskc

Algorithms for solving Positive Negative Partial Set K-Cover problem

pollen_specific_motifs

pydna_melting

A python wrapper for https://github.com/JanZrimec/DNA_melting_bubbles_TIDD

pygenometracks

python module to plot beautiful and highly customizable genome browser tracks

pygreat

GREAT analysis, http://great.stanford.edu/public/html/, python wrapper

pyvenn

2 ~ 6 sets venn diagram for python

relax

Data visualization package

relaxed-motif-finding

motif-finding-script

ribbon

A genome browser that shows long reads and complex variants better

s3norm

An normalization method that can normalize high signals without inflate the background noise.

samplot

Plot structural variant signals from many BAMs and CRAMs

scg_lib_structs

Collections of library structure and sequence of popular single cell genomic methods

sci-l3-seq

Demultiplexing code for sci-L3-seq, WGS, target-seq, and co-assay

self_driving_car

Lane detection and Traffic light detection, for Ohio University PAVE student organization

sequence_manipulation_suite

A collection of simple JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. The Sequence Manipulation Suite is commonly used by molecular biologists, for teaching purposes, and for program and algorithm testing.

set_cover_tools

ChIP-seq motif analysis

share_seq_pipeline

SHARE-seq analysis pipeline

singlecell_bloodtraits

Data/analysis repository for "Interrogation of human hematopoiesis..." paper