Comments (2)
from metams.
This is what I was looking for, how to make a new setting object, found it in the help
Synapt.NP <- metaMSsettings(protocolName = "Synapt.QTOF.NP",
chrom = "LC",
PeakPicking = list(
method = "matchedFilter",
step = 0.05,
fwhm = 20,
snthresh = 4,
max = 50),
Alignment = list(
min.class.fraction = .3,
min.class.size = 3,
mzwid = 0.1,
bws = c(130, 10),
missingratio = 0.2,
extraratio = 0.1,
retcormethod = "linear",
retcorfamily = "symmetric",
fillPeaks = TRUE),
CAMERA = list(
perfwhm = 0.6,
cor_eic_th = 0.7,
ppm= 5))
from metams.
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from metams.