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persaj avatar persaj commented on July 23, 2024

@ethanbass was this issue fixed?

I'm having the same problem

Maybe @rwehrens can help?

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ethanbass avatar ethanbass commented on July 23, 2024

@persaj, I know I got it to work, but now I can't remember what the problem actually ended up being. Maybe if you post some the files that you are having trouble importing, I could look at it.

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persaj avatar persaj commented on July 23, 2024

Thanks @ethanbass, I don't know how to extract all the files from R, does it help if I share the .Rproj file?

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ethanbass avatar ethanbass commented on July 23, 2024

Sure, we can try that. I'm not sure you will be able to host it on github if it's more than 100 MB though?

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persaj avatar persaj commented on July 23, 2024

@ethanbass the settings that we used gave NA's, but we've worked out a fix.
We worked around the NA by adding the code if (**is.na(relI) |** relI < 0) in the last part.
Below the code that can be used:
Fix_getannotationsmat.txt

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