issues for specific region about gci HOT 3 OPEN

1. Yeah, in the newest version of GCI (v0.4), I added the function to generate GCI scores for each specific region.
2. As GCI is a tool for assesing genome continuity while plotting is just an additional function, GCI would plot all chromosomes in defaut. However, in the latest version, the script plot_depth.py in the directory utility can generate plots only for the sepcific regions if providing -R option (as descripted in #4)
3. I'm so sorry for that, out of memory also happens to me usually. I do think I need to solve this problem some day. And good suggestions, I have added the funcion of logging in the latest version of GCI (v0.4), I wish that would help you...

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Thanks for quick reply and update!
Could you please provide a separate script for GCI score calculation of specific region like the plot script in the utility? Then I have not to run the whole process again since I got the depth.gz already~

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Yeah that's a good suggestion. Now in the latest commit, I created a file named GCI_score.py in the folder utility, which can be used to compute GCI score as in GCI.py and all you need is to provide the depth.gz file you got.

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