Comments (2)
That's a good suggestion, I will make this issue open until I add this funtion to the utilities.
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I'm sorry for the delay in replying. Because the "plot" function in GCI.py needs the depth list generated by the "filter" function, you may need to provide the generated depth file (with "-g" option) even if there is a stand-alone function for plotting. However, I have made it (in the directory "utility"), and all you need is to rerun GCI.py and get the depth file.
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Related Issues (10)
- Why not use illumina reads? HOT 1
- only for one chromosome HOT 3
- Uniform window size for visualization HOT 3
- issues for specific region HOT 3
- some questions about input file HOT 1
- a summarized GCI score for multiple specific regions HOT 1
- dealing with pacbiohifi HOT 12
- Curated contigs number can be zero ,even less than 1 HOT 1
- Killed the command HOT 1
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