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maybe calibrateCamera()
isn't always the most accurate way to solve for the correspondence? maybe try elliot's https://github.com/elliotwoods/ofxPolyfit or https://github.com/elliotwoods/ofxNonLinearFit
the idea is to only show control points that have non-coplanar faces they are attached to.
the ideal solution is to write some code that:
this could be "has any coplanar faces" or "has only coplanar faces", as they will respond differently when (for example) two cubes are next to each other. "has only" should be the default.
otherwise it can be very hard to accurately select points.
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