Comments (2)
There are two potential issues.
1) Selfing may affect the variance effective population size, changing the
interpretation of Ne results. More
problematic, it might also change conversion of genetic units to physical
units, since those are all in terms of
Ne.
2) If the individuals sampled are not outbred, the frequency spectrum would be
substantially distorted. For
example, if all the sampled individuals were the direct result of
self-fertilization, the number of singletons will
be dramatically depressed.
Original comment by [email protected]
on 6 Apr 2010 at 4:22
from dadi.
In regards to 1), Crow and Denniston (1988) _Evolution_ 42:482 suggests that
selfing should *not change* the
variance effective population size. (Comment after Eq. 19.)
Original comment by [email protected]
on 6 Apr 2010 at 4:24
from dadi.
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