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Jinliang Yang's Projects

angsd icon angsd

Program for analysing NGS data.

angsd-wrapper icon angsd-wrapper

Wrapper scripts and documentation to make angsd more usable

auto-gpt icon auto-gpt

An experimental open-source attempt to make GPT-4 fully autonomous.

avocado icon avocado

A Variant Caller, Distributed. Apache 2 licensed.

bama icon bama

R Package Implementing High Dimensional Bayesian Mediation Analysis

bayesr icon bayesr

Bayesian hierarchical model for complex trait analysis

bcbio-nextgen icon bcbio-nextgen

Best-practice pipelines for fully automated high throughput sequencing analysis

bmapathway icon bmapathway

MATLAB source code to accompany the PLoS Genetics paper, "Integrated enrichment analysis of variants and pathways in genome-wide association studies indicates central role for IL-2 signaling genes in type 1 diabetes, and cytokine signaling genes in Crohn's disease".

cgat icon cgat

CGAT - Computational Genomics Analysis Tools

cn icon cn

My Blog in Chinese

dadi icon dadi

Automatically exported from code.google.com/p/dadi

dartr icon dartr

Importing and Analysing DArT type snp and silicodart data

deeper icon deeper

Deep learning in R using existing software. For self learning purposes.

demo icon demo

RNA-seq pipeline for UCD farm job submission

evolution icon evolution

This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'

farmer icon farmer

An R package to submit pipeline on farm for genomic and genetic analysis.

fswatch-rsync icon fswatch-rsync

Watches and synchronizes a local folder with a remote folder via another server over ssh

gemma icon gemma

Genome-wide Efficient Mixed Model Association

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