yandgong307 Goto Github PK
Type: User
Type: User
Code Repository for Satpathy Granja et al 2019
Shell and R scripts used to process single-cell RNAseq files using the 10X library construction kit
mapping somatic variants to cell barcodes in scRNA-Seq data
single cell ATACseq pipeline
bedtools - the swiss army knife for genome arithmetic
mutation(barcode) caller for 10x single cell data
Tutorial on Data Manipulation in Python
Pileup biallelic SNPs from single-cell and bulk RNA-seq data
finds mutants in your scRNA-seq experiment
Visualize scRNA-seq results.
A pipeline to process scRNA-seq (10X chromium) and scDNA-seq CNV data and infer clone-specific expression using clonealign
Focusing on 3 key methods (UMAP, t-SNE, scVI) by using scRNA-seq data
Clustering on Network of Samples
My solution to Bioinformatics Specialization (Finding Hidden Messages in DNA; Genome Sequencing; Comparing Genes, Proteins, and Genomes; Molecular Evolution; Genomic Data Science and Clustering; Finding Mutations in DNA and Proteins; Bioinformatics Capstone: Big Data in Biology)
Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19
Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.
Workflows and analysis of scRNA-seq of Olfactory Projection Neurons for Li, Horns et al. (2017)
Analysis of early neurogenesis development data from droplet sequencing
Harmony framework for connecting scRNA-seq data from discrete time points
scripts for analyzing data of macrophage development in human
Single (i) Cell R package (iCellR) is an interactive R package to work with high-throughput single cell sequencing technologies (i.e scRNA-seq, scVDJ-seq and CITE-seq).
IHC-image analysis workflow
A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter)
Immunology-related bioinformatics data and tools
Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.
useful functions for scRNA-seq analysis
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.