Wraps the existing tree estimation programs such as dnapars (from Phylip) and RAxML. Please let me know if you know any good tree estimation program not supported in this package.
- seqboot (Phylip)
- For generating bootstrap dataset
- dnapars (Phylip)
- For parsimoneous estimation
- raxmlHPC (RAxML)
- For likelihood base estimation
- BioPython
- For converting FASTA formatted sequence alignment to Phylip format