LightSheet scripts that are useful to manipulate the data.
For All scripts, you can get the ussage by typing ./script.py --help
bdvxml.py
: Python class to generate Big Data Viewer compatible XML files
CleanUnlaid.py
: Python script to remove all unlaid spots from a Mamut XML file
hdf5_to_8RAW.py
: Python script to convert BDV HDF5 files into 8bit raw files
hdf5_to_TIFF.py
: Python script to convert BDV HDF5 files into TIFF stack
makeIlastikAnalysisSetFromSingleTP.py
: Python script to convert single timepoint BDV HDF5 files into a Ilastik compatible HDF5 file
makeIlastikAnalysisSet.py
: Python script to convert a multiple timepoint BDV HDF5 file into a Ilastik compatible HDF5 file