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Chunlei's Projects

nano-snakemake icon nano-snakemake

A snakemake pipeline for SV analysis from nanopore genome sequencing

snaf icon snaf

Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing data, it further leverages both deep learning and hierarchical Bayesian models to prioritize certain candidates for experimental validation

somaticseq icon somaticseq

An ensemble approach to accurately detect somatic mutations using SomaticSeq

sv-callers icon sv-callers

Snakemake-based workflow for detecting structural variants in genomic data

talon-paper-2019 icon talon-paper-2019

Contains reference files and scripts for the analyses in the TALON paper

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