xflicsu Goto Github PK
Name: Xianfeng Li
Type: User
Company: Peking University
Bio: NGS analyser
Location: China
Name: Xianfeng Li
Type: User
Company: Peking University
Bio: NGS analyser
Location: China
Micro DNA identification
Scripts for merging circRNA prediction output
A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data
Discovering the Circular RNA Interactions with RNA-binding Proteins and Ribosomes
Sample-specific CircRNA Viewer
circular RNA quantification tools
Chromatin Interaction Site Detector
cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data
Cluster-based analysis of CpG methylation
The CoDeS3D toolkit for combined analysis of HiC and eQTL data
Collection bioinformatics tools from public websites
The coMET package is a web-based plotting tool and R-based package to visualize different genome-wide association scans such as EWAS (epigenome-wide association scan) results in a genomic region of interest. coMET provides a plot of the EWAS association signal and visualisation of the methylation correlation between CpG sites (co-methylation). The coMET package also provides the option to annotate the region using functional genomic information, including both user-defined features and pre-selected features based on the Encode project. The plot can be customized with different parameters, such as plot labels, colours, symbols, heatmap colour scheme, significance thresholds, and including reference CpG sites. Finally, the tool can also be applied to display the correlation patterns of other genomic data, e.g. gene expression array data.
A Python implementation of Girvan-Newman community detection algorithm for weighted graphs
make complex heatmaps as well as self define annotation graphics
ConsensusTME Gene Sets and R Script
Bioinformatics / detection of periodic patterns in gene expression data
A repository for sharing information on available COVID-19 RNA-Seq datasets
Finding CpG islands in genome sequences
CREAM (Clustering of Functional Regions Analysis Method) is a new method for identification of clusters of functional regions (COREs) within chromosomes.
Ensembl gene disambiguation
Code for multi-sample variant calling from sequence data of pooled or unpooled DNA samples
Translational contributions to tissue-specificity in rhythmic and constitutive gene expression.
perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)
DaPars(Dynamic analysis of Alternative PolyAdenylation from RNA-seq)
DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies a series of filters and integrates data across replicate sets to arrive at a precise list of circRNA candidates.
Deep Learning papers reading roadmap for anyone who are eager to learn this amazing tech!
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.