Comments (1)
Hi,
Thanks for your report - you can now (in the edge version, not released yet) use --checkm2-quality-report
as input (rather than --checkm-tab-table
.
Re dashing, also fixed.
from galah.
Related Issues (20)
- Update fastANI requirement to 1.31 HOT 1
- Galah not clustering MAGs with ANI greater than the threshold HOT 3
- Dereplicate MAGs on strain level HOT 2
- --min-aligned-fraction, as fraction?
- sketches in pre-cluster for a little bit distant related genomes HOT 4
- dashing2 instead of dashing1
- Regarding galah output HOT 6
- If input genomes are short, they don't cluster
- Dashing failed HOT 1
- Intermediate output
- Low quality genomes end up as seperate species.
- Wrong genome annotation
- Compilation error HOT 2
- add bindash support instead of dashing HOT 1
- Failed to find sufficient version of dashing HOT 1
- unnecessary fastani check
- Finch running time HOT 1
- skani is not parallelized in `galah cluster` HOT 2
- error: unexpected argument '-d' found HOT 2
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from galah.