Comments (1)
Hello Ben,
It has been a long time since my last message. Just want to make sure that the suggestions above make sense to you. Bindash is by far the fastest and also the most accurate MinHash like algorithm, better than hyperloglog due to smaller variance. Calling bindash instead of dashing should be very easy because the output is the Mash index, 1- index will then be ANI for clustering.
Thanks,
Jianshu
from galah.
Related Issues (20)
- Update fastANI requirement to 1.31 HOT 1
- Galah not clustering MAGs with ANI greater than the threshold HOT 3
- Dereplicate MAGs on strain level HOT 2
- --min-aligned-fraction, as fraction?
- sketches in pre-cluster for a little bit distant related genomes HOT 4
- dashing2 instead of dashing1
- Regarding galah output HOT 6
- If input genomes are short, they don't cluster
- Dashing failed HOT 1
- Intermediate output
- Low quality genomes end up as seperate species.
- Wrong genome annotation
- Compilation error HOT 2
- checkM table not working HOT 1
- Failed to find sufficient version of dashing HOT 1
- unnecessary fastani check
- Finch running time HOT 1
- skani is not parallelized in `galah cluster` HOT 2
- error: unexpected argument '-d' found HOT 2
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