Comments (1)
jianshu93
commented on August 23, 2024
Hello Ben,
It has been a long time since my last message. Just want to make sure that the suggestions above make sense to you. Bindash is by far the fastest and also the most accurate MinHash like algorithm, better than hyperloglog due to smaller variance. Calling bindash instead of dashing should be very easy because the output is the Mash index, 1- index will then be ANI for clustering.
Thanks,
Jianshu
from galah.
Related Issues (20)
- Update fastANI requirement to 1.31 HOT 1
- Galah not clustering MAGs with ANI greater than the threshold HOT 3
- Dereplicate MAGs on strain level HOT 2
- --min-aligned-fraction, as fraction?
- sketches in pre-cluster for a little bit distant related genomes HOT 4
- dashing2 instead of dashing1
- Regarding galah output HOT 6
- If input genomes are short, they don't cluster
- Dashing failed HOT 1
- Intermediate output
- Low quality genomes end up as seperate species.
- Wrong genome annotation
- Compilation error HOT 2
- checkM table not working HOT 1
- Failed to find sufficient version of dashing HOT 1
- unnecessary fastani check
- Finch running time HOT 1
- skani is not parallelized in `galah cluster` HOT 2
- error: unexpected argument '-d' found HOT 2
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from galah.