A set of Notebooks to demonstrate how to access the images and metadata from OMERO.
To build the image run, in this repository:
$ docker build -t training-notebooks .
The image contains the dependencies required to connect to OMERO 5.4.x.
To start the image:
$ docker run -it -p 8888:8888 training-notebooks
The notebooks in this repository are meant to exemplify how to access data in OMERO.
| Notebook | Lang | Description |
|---|---|---|
| OMERO example | Py | Shows how to connect to OMERO and read data. |
| Calculate Sharpness | Py | Calculates sharpness of images and generates heatmaps. |
| Illumination Correction | Py | Correct the selected image. |
| R-OMERO example | R | Shows how to connect to OMERO and manipulate data using R. |
| idr0021 ROIs | R | Read OMERO.table data, performs some basic statistics on it and create a plot. |
| Statistics Fruit Fly | Py | Process Images stored in OMERO using CellProfiler. |
React
Typescript
Django
Laravel
Facebook
Microsoft
Google
Alibaba
D3
Tencent