To De nove assemble Minion reads back to Amplicon sequences.
Sixteen 10KB amplicons were sequenced in two Nanopore minion runs.
- ont_albacore-0.8.4 and ont_albacore-1.1.0 (Basecaller)
- Samtools (Version 1.4)
- BWA (Version 0.7.12)
- BBMap (Version 37.00)
- Blat (Version 36x2)