wenchaolin / busco-mod Goto Github PK

HI!
Where can I find tar -zxvf BUSCO_v1.0.tar.gz??
Thank you

when I was run the busco, its show bbtools tool was not found
2023-04-10 14:48:04 INFO: ***** Start a BUSCO v5.4.6 analysis, current time: 04/10/2023 14:48:04 *****
2023-04-10 14:48:04 INFO: Configuring BUSCO with local environment
2023-04-10 14:48:04 WARNING: Running Auto Lineage Selector as no lineage dataset was specified. This will take a little longer than normal. If you know what lineage dataset you want to use, please specify this in the config file or using the -l (--lineage-dataset) flag in the command line.
2023-04-10 14:48:04 ERROR: The parameter "in (--in)" was not provided. Please add it in the config file or provide it through the command line
2023-04-10 14:48:04 ERROR: BUSCO analysis failed!
2023-04-10 14:48:04 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues

So I search this issue in google but not found the solution way , how could I do to deal with this problem

hoping for your replay

thank you

Hi!
This is a silly question for you, but I am not familiar with the command export. While I was looking at the installing manual you mentioned

you will need to make sure that the following required software
packages are installed with their paths declared in the config.ini file.

What I did is:
BUSCO_CONFIG_PATH=/home/edgar/BUSCO/config/config.ini
NCBI_CONFIG_PATH=/home/edgar/BUSCO/config/config.ini
HMMER_CONFIG_PATH=/home/edgar/BUSCO/config/config.ini

Is this correct? The problem is that I got an error while running BUSCO. I couldn't get a log file and the config.ini is empty even though I copied the config.ini.default to config.ini

Thank you in advance for your help.