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civic-server

Backend Server for CIViC Project

clusteringconsensus

clusterviz

gene cluster visualization tool

covidcg

A COVID-19 CoV Genetics (CG) browser to inform therapeutics development

d3-cloud

Create word clouds in JavaScript.

dagflow

Module to create DAG Task and Manage Task on SGE

daligner-extras

Support for running DALIGNER (mostly scripts)

dbg2olc

dcnet

DCNet — Denoising (DNA) Sequence With a LSTM-RNN and PyTorch

deeplearningzerotoall

TensorFlow Basic Tutorial Labs

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

delftrnaseq

RNA-Seq pipeline used at the Delft Bioinformatics Lab

dextractor

Bax File Decoder and Data Compressor

djblast

A standalone WWW BLAST framework for flexible queries on sequence database.

dnds

Calculate dN/dS ratio precisely (Ka/Ks) using a codon-by-codon counting method.

draw_ngs

Programs for drawing chromosome figure by using NGS data

ensembl-pipeline

Job management for the Ensembl Genebuild pipeline

estimate_genome_size.pl

Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish

falcon

FALCON: experimental PacBio diploid assembler

falcon-integrate

Build and integration- testing for FALCON

fapiao2excel

把发票金额提取出来保存到Excel中用于报销和统计

fasta-rename

Parse a file with fasta sequences. Replace the identifier of a fasta sequences by a short identifier and generate a file with renamed fasta sequences and a file of mapping.

fasta_length_hist

Script to plot the histogram of fasta lengths

fastadmin

FastAdmin是一款基于ThinkPHP5+Bootstrap的极速后台开发框架。

fastahack

utilities for indexing and sequence extraction from FASTA files

faststructure

A variational framework for inferring population structure from SNP genotype data.

fastxcropper

Crop or trim reads in fastq(a) format.

filex

A fastadmin plugin

flarepoint-crm

Flarepoint is a free, open-source and self-hosted CRM platform based of Laravel 5

fqbasesum

This is a simple tool to calculate reads number and total base count in FASTQ file.