Importing data from FragPipe about pdv HOT 4 OPEN

Hi Witek,

Sorry for the inconvenience. Could you please share your files with me? You know, sometimes after converting the raw files, the software might make some changes in the spectrum file. So, I am not very clear what's the exact problem. But I can take a look this week.

Kai

from pdv.

Hi Kai!
Thanks for the reply!
With single file ADPR-5-1_calibrated.mgf and single psm1.tsv it works. It doesn't work If I want to upload more than 1 file into PDV or if I use combined.pep.xml file.

All the data you can find here:
https://owncloud.gwdg.de/index.php/s/HQUpL80r0GyoxoK
password: pdv

Greets
Witek

from pdv.

Got it. I will take a look and hopefully fix it this week.

Kai

from pdv.

Hi Witek,

Could you please convert the raw files to .mzML? It should work when you input one combined .tsv result from FragPipe and multiple .mzML files. Since there is no direct relationship between results files and raw files, especially when users convert the format, it's complicated to map a single spectrum back to each raw file. However, I am working on this part.

Please try the solution I mentioned and let me know if you meet any new problems.

Kai

from pdv.