Comments (7)
Hi! I have been following a similar approach with Python to read the CSV files and process the vaccination data since July 2021, but only today I am publicly releasing the data (but it was used by collaborators and other research groups).
There are many problems in defining, for example, if we consider a municipality following the place of residence or application of the dose. The main problem is that the field "residence" comes from the internal SUS registration data, and many people (including me :) ) do not update it when moving to another city.
Tomorrow the first automatic update will happen and the data will be released. If you have time, you can compare it with yours. I have no idea when I will have time to document and explain what I do, but I hope to do it soon.
from covid19br.
from covid19br.
Hi @wcota, that's great! I would be very thankful if you can take over the maintainance of this.
Below you can find some R code for a quick comparison. I sample checked a few IBGE codes.
The code computes the (cumulated number of) people with at least one vaccine dose from your repo and mine. There are indeed some differences, but more or less the trends look similar. Still, we need to compare people fully vaccinated and total number of doses. And for more IBGE of course. Hope this is a good starting point!
library(data.table)
read.gz <- function(url){
file <- paste0(tempfile(), ".gz")
download.file(url, file)
fread(file)
}
u1 <- "https://github.com/wcota/covid19br/blob/master/vaccination/processed_AC.csv.gz?raw=true"
x1 <- read.gz(u1)
u2 <- "https://github.com/covid19datahub/covid19br/blob/main/data.csv.gz?raw=true"
x2 <- read.gz(u2)
ID.IBGE <- 1200336
a <- setkey(x1[x1$ibgeID==ID.IBGE], date)
a <- a[dose==1, .(PeopleVaccinated = sum(count)), by = date]
a$PeopleVaccinated <- cumsum(a$PeopleVaccinated)
plot(a$date, a$PeopleVaccinated, type = "l")
b <- x2[x2$IBGE==ID.IBGE]
lines(b$Date, b$PeopleVaccinated, col = 2)
from covid19br.
Hi! I forgot to mention, but the municipality data are now available at https://github.com/wcota/covid19br-vac
from covid19br.
Hi! Great work! I'm integrating your data and redirecting users from my repo to yours.
One question: I see that the column dose
has a value of zero in correspondence of the vaccine "Johnson&Johnson". Am I correct to assume that:
dose=0
corresponds to people fully vaccinated with one single shot?dose=1
is the first dose of a two-doses vaccination cicle?dose=2
is the second dose of a two-doses vaccination cicle?dose=3
is a booster dose?
Many thanks!
from covid19br.
Yes, that's correct @eguidotti.
from covid19br.
Data integrated! They should be available in the next 24h at https://covid19datahub.io
Thanks a lot!
from covid19br.
Related Issues (20)
- commit 37c34f8, Curitiba, faltando novos casos e obitos. HOT 3
- Commit 6936053 faltando dado de vários estados HOT 3
- Casos Ativos HOT 2
- Recoveries Doubling in State Data HOT 1
- Arquivo cases-brazil-cities-time.csv não foi atualizado e cases-brazil-cities-time.csv.gz foi HOT 1
- 07/11 e 08/11 com vários valores de novos casos negativos HOT 1
- FinMango - Data Publishing License
- Mudança de dados entre datas HOT 2
- Dúvida
- 0 deaths now appearing in some municipalities after data update HOT 4
- Série temporal de vacinação HOT 2
- Recuperados por 100 mil habitantes HOT 1
- Dados do MS-SUS HOT 2
- NewDeaths e NewCases estão com 0 no dia 2021-05-16 HOT 1
- Atualização dos dados HOT 1
- Arquivo "cases-brazil-cities-time.csv.gz" perdeu observações HOT 4
- Número de casos confirmados por municípios agora só contém os dados de 2022 HOT 2
- Fix git history (and new temporary data repository)
- Colunas com valores "congelados" HOT 3
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from covid19br.