wanliu2019,github

hgtector

HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.

ice

Web based Registry platform for managing synthetic biological parts

luigi

Luigi is a Python module that helps you build complex pipelines of batch jobs. It handles dependency resolution, workflow management, visualization etc. It also comes with Hadoop support built in.

metaphlan

MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data

metawrap

MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis

mine-database

Metabolic In silico Network Expansion (MINE) Database Construction and DB Logic

minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

ncbi-genome-download

Scripts to download genomes from the NCBI FTP servers

neo4j-browser

Neo4j Browser is the general purpose user interface for working with Neo4j. Query, visualize, administrate and monitor the database.

ngsqctoolkit

NGS QC Toolkit: a toolkit for quality check and filtering of next generation sequencing data of Roche and Illumina technology (http://www.nipgr.res.in/ngsqctoolkit.html)

pan-genome-analysis

Processing pipeline for pan-genome visulization and exploration

pan-genome-visualization

Visualization of the pan-genome output by panX

panphylo

Construction phylogenetic tree using genome or amino acid sequences

paprbag

Pathogenicity prediction of bacterial genomes

phenome

The ultimate cross-framework component compiler

phyloflash

phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.

pmbio.org

Website for the precision medicine workshop

prokka

:zap: :aquarius: Rapid prokaryotic genome annotation

protocols

protocols for bioinformatics data analysis

pubmedpy

Utilities for interacting with NCBI EUtilities relating to PubMed

A fast and simple framework for building and running distributed applications. Ray is packaged with RLlib, a scalable reinforcement learning library, and Tune, a scalable hyperparameter tuning library.