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VVvanL's Projects

smaug icon smaug

Matlab code for running the SMAUG analysis for Karslake and Biteen, submitted (2019)

syn_bot icon syn_bot

Syn_Bot synapse calculation macro for FIJI

tda_applied_on_smlm icon tda_applied_on_smlm

This tutorail enables the use of persistent images as vector representation of structural properties of Sinlge Molecule Localization Microscopy (SMLM) to make further analysis like Principal Component Analysis (PCA)

trackinggui_and_localization_public icon trackinggui_and_localization_public

Parthasarathy Lab particle localization files and particle tracking GUI, especially making use of radial symmetry based localization (Public Repository)

trackntrace icon trackntrace

TrackNTrace is an open source MATLAB framework for single molecule localization, tracking, and super-resolution applications written by Simon Christoph Stein and Jan Thiart from the University of Goettingen.

trait2d icon trait2d

TRAIT2D is a cross-platform Python software package with compilable graphical user interfaces (GUIs) to support Single Particle Tracking experiments.

uvadlc_notebooks icon uvadlc_notebooks

Repository of Jupyter notebook tutorials for teaching the Deep Learning Course at the University of Amsterdam (MSc AI), Fall 2021

vbspt icon vbspt

Analysis of Single Particle Tracking data

zerocostdl4mic icon zerocostdl4mic

ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy

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