vvvanl,VVvanL,github

abeta_smlm_analysisfiles

Files to format localization data from SRPipeline

anadda

anaDDA software for extracting transition rates from D distributions

big-fish

Toolbox for the analysis of smFISH images.

big-fish-examples

Notebooks to illustrate how BigFISH is working.

cajalcourse_2023

Code, references, and other resources relevant to the single-molecule tracking project

christorm

ImageJ scripts and macros for processing ThunderSTORM images

ddc

Correcting for Repeat localizations SMLM

decode

This is the official implementation of our publication "Deep learning enables fast and dense single-molecule localization with high accuracy" (Nature Methods)

deep-storm

Official implementation of Deep-STORM for dense 2D localization microscopy

deeppalm-trained-models

Three trained models for an emitter density of 4, 6 and 9 emitters / µm^2 to be supplied to the CNN architecture published by Nehme et al.

diinamic

Clustering analysis on single-molecule localization microscopy data

extrack

ExTrack MLE for diffusive noisy single-particle tracks

fastpsffitting

Repository of the Matlab File Exchange contribution "Fast Gaussian Point Spread Function Fitting (MEX)"

Gramm is a complete data visualization toolbox for Matlab. It provides an easy to use and high-level interface to produce publication-quality plots of complex data with varied statistical visualizations. Gramm is inspired by R's ggplot2 library.

lab-website-template

(Pre-release) An easy-to-use, flexible website template for labs, with automatic citations, GitHub tag imports, pre-built components, and more

locan

Localization analysis software for super-resolution microscopy

matgeom

Matlab geometry toolbox for 2D/3D geometric computing

mathematical-methods-in-deep-learning-ipython

Python code (in the form of Jupyter ipython notebooks) to support the book "Math and Architectures of Deep Learning" (Krishnendu Chaudhury with Ananya Ashok, Sujay Narumanchi, Devashish Shankar).