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arrayfire

ArrayFire: a general purpose GPU library.

brion

Blue Brain C++ File IO Library

cytoskeleton-analyser

Analysis of simulated cell microtubules.

dealii

The development repository for the deal.II finite element library.

dmsh

:spider_web: Simple mesh generator inspired by distmesh.

gym

A toolkit for developing and comparing reinforcement learning algorithms.

mearec

Fast and customizable of extracellular recordings on MEA

meshio

:spider_web: input/output for many mesh formats

meshplex

:spider_web: Compute interesting points, areas, and volumes in simplex meshes of any dimension.

meshzoo

:tiger: :cow: :panda_face: A collection of meshes for canonical domains

mitosim

Stochastic simulator of mitochondria represented as a dynamic spaceless graph

mitosim-postprocessor

Complements mitoSim - the simulator of cell mitochondria as a spacelss graph.

morphio

A python and C++ library for reading and writing neuronal morphologies

mosaicsc

Simulation of space-embedded molecular aggregates using Potts model

networkit

NetworKit is a growing open-source toolkit for large-scale network analysis.

neurom

Neuronal Morphology Analysis Tool

openworm

Project Home repo for Central Dockerfile and Project-wide issues

optimesh

:spider_web: Mesh optimization, mesh smoothing.

pygalmesh

:spider_web: A Python interface to CGAL's meshing tools

spikingjelly

SpikingJelly is an open-source deep learning framework for Spiking Neural Network (SNN) based on PyTorch.

spyking-circus

Fast and scalable spike sorting in python

surface_evolver

Ken Brakke's Surface Evolver

tmd

utils

A collection of some handy utilities