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voutcn avatar voutcn commented on July 18, 2024 1

At this stage please use -o/--out-dir option to specify different output directories for different assemblies. We will add your requested feature in the next release.

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tseemann avatar tseemann commented on July 18, 2024

Thanks, I look forward to it!

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voutcn avatar voutcn commented on July 18, 2024

@tseemann please check out the head in the master branch. An option --out-prefix is supported for the naming of the contig file & log file only. Putting multiple assemblies to one output folder is not allowed, because I found that's error prone to mix two assemblies when using --continue.

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