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regnetcmap

This package provides tools to analyse CMAP data with the goal of reconstructing the regulatory network of TFs. Part of ongoing research.

repdata_peerassessment1

For online courses: Peer Assessment 1 for Reproducible Research

sandbox

Pyro models and misc examples.

schpf

Single-cell Hierarchical Poisson Factorization

scvi-tools

Deep generative models for single-cell omics data

scvi-tools-skeleton

Template repository for creating novel models with scvi-tools

scvi-tutorials

Notebooks used in scvi-tools tutorials

slimfinderr

Tools for systematic search for short linear motifs (SLIMs) using SLIMSuite and protein interaction data in R

spacejam

SpaceJam is an analysis platform for performing data exploration, gene DE analysis, estimating cell type abundance and prioritising cell communication events using Nanostring GeoMx data. We use probabilistic models tailored to Nanostring WTA data, extend cell2location to multiple samples and reach more detailed biological insights.

spotlight

Spatial Transcriptomics Capture Location Deconvolution

swot

Identify email addresses or domains names that belong to colleges or universities. Help automate the process of approving or rejecting academic discounts.

viral_motifs

viral_project

Identifying novel functional linear motifs in human protein interaction networks using host-viral interactions and the principle of convergent evolution