vistalab Goto Github PK

acpc-anat

Normalize anatomicals to RAS and to acpc registering to MNI or providing AC-PC coordinates.

afq-devo

Automated Fiber Quantification

boot_dwi

Resampling dwi directions

brainbeat

colorblind

Simulations for color blind observers and color discrimination

contrack_score

Matlab implementation of ConTrack_score

coveragereading

Analyzing visual field coverage (field of view) in ventral occipital cortex. Emphasis on reading circuitry

docker

A repository for vistalab docker files

docker-life

dwi-flip-bvec

Flips bvec x, y, or z

dwi-tools-source

Includes source code for ConTrack, Quench, DTIQuery and other tools

elastic_basis_pursuit

Elastic Basis Pursuit

encode

Method for encoding brain connectomes in multidimensional arrays (tensors).

ensembletractography

The code to perform the ensemble tractography and reproduce the results in the publication (Takemura et al. in press). Under construction.

fw-gear-dtiinit-diffusion-maps

Generate diffusion maps from dt6

humantrichromacyrevisited2012

This repository contains the Matlab code to replicate key results from the published paper: Human Trichromacy Revisited

iqdwi

Image quality for diffusion weighted imaging

itkgray

ITKGray Branch of ITKSnap Src

jsonio

JSONio: a MATLAB JSON library

knkutils

MATLAB utility functions written by Kendrick Kay

lesionlabel

label an ROI from an anatomical scan

life

MatLab routines for validating white-matter connectomes generated using diffusion-weighted imaging.

mitk_vista

The bridge between MITK diffusion and vistasoft.

mrmesh

Source code for buildMesh and mrMeshSrv

mrq

multibval

Multi bvalue DWI

osmosis

Models for diffusion data

pdb_files

Reading and writing .pdb tractography files, in python

photon-calculator

prfmodel