Vini Salazar's Projects
Classifier for ORGanelles (Inter alia)
The Curriculum Development Handbook. How to assemble and maintain a Carpentries lesson.
Repositório contendo arquivos do Curso de Programação e Computação Científica para Biólogos
Data Carpentry website
Python API for the DfAnalyzer application
Reorients assembled microbial sequences
The smallest Docker image with Miniconda3 (Python 3.7) (~143MB)
A feature full Tomcat (SSL over APR, etc.) running ERDDAP
Reproducible Computational Environments using Containers
Community Documentation for the Carpentries
Contains the 'gold standard' ERDDAP configuration, with datasets compliant with IOOS Metadata Profile 1.2
Python interface for ERDDAP
A typical Python package that needs some TLC.
The fcoex package implements an easy-to use interface to co-expression analysis based on the FCBF (Fast Correlation-Based Filter) algorithm. it was implemented especifically to deal with single-cell data. The modules found can be used to redefine cell populations, unrevel novel gene associations and predict gene function by guilt-by-association. The package structure is based on the CEMiTool package.
my vim configuration (lot of python, autocompletition, fuzzy finder, debugger, ...)
Introduction to Geospatial Raster and Vector Data with Python
A skill-up for new lesson Maintainers
gliderpy is a thin wrapper around erddapy with custom methods and plotting functionality to browse, fetch, and plot glider data.
A multilingual glossary package.
A user-friendly workflow for phylogenomics
Generate polished résumés and CVs in HTML, Markdown, LaTeX, MS Word, PDF, plain text, JSON, XML, YAML, smoke signal, and carrier pigeon.
HPC Python lesson materials
Scaling studies on high-performance clusters using Snakemake workflows
Multi-level network clustering based on the Map Equation
Bioinformatics program inStrain
Example lesson using The Carpentries lesson template.
A Carpentry style lesson on machine learning with Python and scikit-learn.