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metagenome_pipeline

Pipeline for automated quality control, processing and analysis of large datasets consistent of multiple metagenome samples.

metagenomics

metagenomics-1

MetScale: snakemake workflows to scale metagenome analyses

metagenomics-2

Tutorial for Metagenomics Analyses

metagenomics-3

Snakemake workflow for functional analysis of metagenomic WGS read data.

metagenomics2021

Metagenomics course

metagenomics_summer_school

Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in December

metagenomics_workshop

Visualization of Metagenomic and Metatranscriptomic Data in R | ECOSCOPE

metagenomicspractical

Hands-on practical for learning metagenomic workflow, from binning to annotation.

metaphlan-nf

Simple Metaphlan 2 Nextflow pipeline

metapi

A general metagenomics data mining system focus on robust microbiome research

metapigs

data workflows for pig probiotic & antibiotic trials metagenome analysis

metapop

A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations

metapore

MetaPORE – Chiu Laboratory, University of California, San Francisco

metasequencing

A metagenomics pipeline using the CGAT framework.

metavirs

Viral Metagenomics Assembly and Annotation Pipeline

metavscan

A virus scanning pipeline for meta-transcriptomic data

metlab

metontiime

A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework

mgnify-lr

Evaluation of long-read support for the MGnify pipeline

mgv

Supporting code for uncultivated gut virus manuscript

micone

The Microbial Co-occurrence Network Explorer

microbial-genomics-2020

https://aldertzomer.github.io/Microbial-Genomics-2020/ Day 1.2 and 1.3 of the Microbial Genomics course 2020

microbialgenomemetagenomecourse

Bioinformatic course on bacterial genomics and metagenomics Helsinki December 2017

microbiome16s_pipeline

Reproducible Scalable Pipeline For Amplicon-based Metagenomics (RSP4ABM) is a bioinformatic pipeline designed for convenient, reproducible and scalable amplicon-based metagenomics

microbiome_singulairty_version

micromamba-docker

Rapid builds of small Conda-based containers using micromamba.

micropipe

A pipeline for high-quality bacterial genome construction using ONT sequencing

micropipe-1

A pipeline for high-quality bacterial genome construction using ONT sequencing

micropro

A microbial profiling framework for metagenomic analysis