Vinícius H. F. Santos¹, Alan Lorenzetti^2,3 and Tie Koide²
<sub>1. Departamento de Biologia, Faculdade de Filosofia, Ciências e Letras de Ribeirão Preto (FFCLRP), Universidade de São Paulo.
2. Departamento de Bioquímica, Faculdade de Medicina de Ribeirão Preto (FMRP), Universidade de São Paulo.
3. Bioinformatics Graduate Program, Universidade de São Paulo</sub>

This repo contains the detailed computational methods used in our work. This research project was fully developed at Microbial System Biology Lab) of Ribeirão Preto Medical School at University of São Paulo, Brazil.

The pipeline was divided into the followind steps:

1. Basecalling
2. Dempultiplexing
3. Trimming
4. Assembling

The command used in each step are available in the file pipeline.sh

Feel free to contact us!

Vinícius H F Santos

[email protected]

vhfsantos.netlify.com