venkataduvvuri Goto Github PK

data_science_blogs

A repository to keep track of all the code that I end up writing for my blog posts.

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

dna-pytorch-tutorial

a super basic tutorial on how to create a pytorch models for raw DNA sequences

docs

TensorFlow documentation

dsaide

R Package - Dynamical Systems Approach to Infectious Disease Epidemiology

dynamics-practical

Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data

epicov_downloader

Download all EpiCoV sequcnes from GISAID

epimodel-gallery

Gallery of Network-Based Epidemic Model Templates for EpiModel

epiparameter

R package with epidemiological parameters for infectious diseases

epitope-prediction

R package implementing a simple method for CD8 T cell epitope prediction by MHC class I binding for HLA and other MHC-I molecules.

evescape

Official repository for the paper "Learning from pre-pandemic data to forecast viral antibody escape"

fastbaps

A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data

feature-selector

Feature selector is a tool for dimensionality reduction of machine learning datasets

figtree

Automatically exported from code.google.com/p/figtree

gbmunge

Munge GenBank files into FASTA and tab-separated metadata

gfpgan

GFPGAN aims at developing Practical Algorithms for Real-world Face Restoration.

ggpubr

'ggplot2' Based Publication Ready Plots

ggtree

:christmas_tree:Visualization and annotation of phylogenetic trees

ggtree-current-protocols

Using ggtree to Visualize Data on Tree-Like Structure

google-research

Google Research - TabNet

gwa_tutorial

A comprehensive tutorial about GWAS and PRS

hack-university-machine-learning

Hack University course "Introduction to Machine Learning" sylabus, course material, python examples, resource links, and data sets

hawk

Hitting associations with k-mers

hiv-mdr-evolution

Understanding patterns of HIV multi-drug resistance through models of temporal and spatial drug heterogeneity

iedb-python

Python SDK for Immune Epitope Database (IEDB) Analysis Tools API

in-boxbart

In-BoXBART: Get Instructions into Biomedical Multi-task Learning

influenzageometry

Code and data for Dalziel et al. 2018 Science

influenza_ph1n1_timecourse

kovid-trees-nf

Fast trees for SARS-CoV-2

learningpyspark

Code base for the Learning PySpark book (in preparation)